Similar HOG based on pairwise relations to

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

HOG:E0789164.1b.2a with 2 members (Lipid scramblase CLPTM1L)

Metazoa / Eumetazoa / Bilateria / Protostomia / Ecdysozoa / Panarthropoda / Arthropoda /

... /

Mandibulata / Pancrustacea / Hexapoda / Neoptera / Endopterygota / Apocrita / Aculeata / Apoidea /

Apinae

Completeness score: 1.00

‹

This HOG has 45 similar HOGs:

Loading, please wait...

Rank	HOG ID	Shared orthologs	HOG size	Description
1	HOG:E0789164.1b.5b.11a.1a	142	73	Lipid scramblase CLPTM1L
2	HOG:E0789164.1b.2a	116	84	Lipid scramblase CLPTM1L
3	HOG:E0789164.1b.4a	73	46	Lipid scramblase CLPTM1L
4	HOG:E0789164.1b.5b.11a	72	110	Lipid scramblase CLPTM1L
5	HOG:E0789164.1b	53	300	Lipid scramblase CLPTM1L
6	HOG:E0789164.1b.1b	32	16	Lipid scramblase CLPTM1L
7	HOG:E0789164.1c.7a	30	17	Lipid scramblase CLPTM1L
8	HOG:E0789164.1c	24	37	Lipid scramblase CLPTM1L
9	HOG:E0789164.1b.2a.2b	22	11	Lipid scramblase CLPTM1L
10	HOG:E0789164	14	350	Lipid scramblase CLPTM1L
11	HOG:E0805431.5d	8	11	cleft lip and palate
12	HOG:E0789164.1b.5b	8	115	Lipid scramblase CLPTM1L
13	HOG:E0789164.1b.3a	8	6	Lipid scramblase CLPTM1L
14	HOG:E0789164.1a	7	6	Lipid scramblase CLPTM1L
15	HOG:E0789164.1b.4a.10b	6	3	Lipid scramblase CLPTM1L
16	HOG:E0123201	6	7	Cleft lip and palate
17	HOG:E0789164.1b.4a.10a	4	2	Lipid scramblase CLPTM1L
18	HOG:E0789164.1b.2a.3a	4	2	Lipid scramblase CLPTM1L
19	HOG:E0506344	4	4	Lipid scramblase CLPTM1L
20	HOG:E0805431.7c	3	507	cleft lip and palate
21	HOG:E0805431	3	702	cleft lip and palate
22	HOG:E0789164.1c.6b.12b	2	1	Lipid scramblase CLPTM1L
23	HOG:E0789164.1c.6b.12a	2	1	Lipid scramblase CLPTM1L
24	HOG:E0789164.1c.6b	2	3	Lipid scramblase CLPTM1L
25	HOG:E0789164.1c.6a	2	1	Lipid scramblase CLPTM1L

Showing 1 to 25 of 45 rows rows per page